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Beyond Bioinformatics | ||||
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Volume 1, Issues 1 - 10 (2005-2007) Current Status False discovery rate paradigms for analyses of microarray gene expression data C. Cheng & S. Pounds, 1(10), 436-446 (2007) PDF, HTML-ABSTRACT
Prediction Model Functional profiling and gene expression analysis of chromosomal copy number alterations L. Conde et al., 1(10), 432-435 (2007) PDF, HTML-ABSTRACT
Views & Challenges
Is there an alternative to increasing
the sample size in microarray studies?
Prediction Model Exploratory methods for checking quality of microarray data E. K. Lee & T. Park, 1(10), 423-428 (2007) PDF, HTML-ABSTRACT
Web Server GeneVenn – A web application for comparing gene lists using Venn diagrams M. Pirooznia et al., 1(10), 420-422 (2007) PDF, HTML-ABSTRACT
Prediction Model Order restricted inference for ordered gene expression (ORIOGEN) data under heteroscedastic variances S. Simmons & S. Peddada, 1(10), 414-419 (2007) PDF, HTML-ABSTRACT
Prediction Model Integrative analysis of the mouse embryonic transcriptome A. V. Singh et al., 1(10), 406-413 (2007) PDF, HTML-ABSTRACT
Prediction Model Incorporation of biological knowledge into distance for clustering genes G. M. Boratyn et al., 1(10), 396-405 (2007) PDF, HTML-ABSTRACT
Prediction Model Genome wide expression analysis of genetic networks in Neurospora crassa D. A. Logan et al., 1(10), 390-395 (2007) PDF, HTML-ABSTRACT
Prediction Model An adaptive alpha spending algorithm improves the power of statistical inference in microarray data analysis J. P. L. Brand et al., 1(10), 384-389 (2007) PDF, HTML-ABSTRACT
Prediction Model Insight into redox regulated gene networks in vascular cells C. D. Johnson et al., 1(10), 379-383 (2007) PDF, HTML-ABSTRACT
Special Issue: Gene Expression Data Analysis (edited by Susmita Datta)
Volume 1, Issue 10 (2007) Views & Challenges Comparative genomics - A perspective S. Sivashankari & P. Shanmughavel, 1(9), 376-378 (2007) PDF, HTML-ABSTRACT
Hypothesis Evolutionary trace analysis of plant haemoglobins: implications for site-directed mutagenesis D. M. R. Sekhara reddy, 1(9), 370-375 (2007) PDF, HTML-ABSTRACT
Views & Challenges An overview on biodiversity information in databases P. Shanmughavel, 1(9), 367-369 (2007) PDF, HTML-ABSTRACT
Current Trends Physiologic modulation of natural killer cell activity as an index of Alzheimer's disease progression P. Prolo et al.,1(9), 363-366 (2007) PDF, HTML-ABSTRACT
Web Database xGENIA: A comprehensive OWL ontology based on the GENIA corpus R. Rak et al.,1(9), 360-362 (2007) PDF, HTML-ABSTRACT
Views & Challenges Functional annotation strategy for protein structures O. Doppelt et al., 1(9), 357-359 (2007) PDF, HTML-ABSTRACT
Editorial Your database is obsolete: the promise of contextual Bioinformatics M. Gollery, 1(9), 356 (2007) PDF, HTML-ABSTRACT
Editorial The role of data mining in turning bio-data into Bioinformation W. Perrizo, 1(9), 351-355 (2007) PDF, HTML-ABSTRACT
Hypothesis Docking of phosphonate and trehalose analog inhibitors into M. tuberculosis mycolyltransferase Ag85C: Comparison of the two scoring fitness functions GoldScore and ChemScore, in the GOLD software M. K. Annamala et al., 1(9), 339-350 (2007) PDF, HTML-ABSTRACT
Volume 1, Issue 9 (2007)
Hypothesis Functional annotation of hypothetical proteins – A review S. Selvarajan & P. Shanmughavel, 1(8), 335-338 (2006) PDF, HTML-ABSTRACT
Current Trends Salivary biomarkers in psychobiological medicine F. Chiappelli et al., 1(8), 331-334 (2006) PDF, HTML-ABSTRACT
Prediction Model New measures of topological stability in phylogenetic trees – Taking taxon composition into account D. Krüger & A. Gargas, 1(8), 327-330 (2006) PDF, HTML-ABSTRACT
Hypothesis Adaptive molecular evolution of virulence genes of avian Influenza - A virus subtype H5N1: An analysis of host radiation R. Kumar et al., 1(8), 321-326 (2006) PDF, HTML-ABSTRACT
Current Trends Molecular drug targets and structure based drug design: A holistic approach S. Singh et al., 1(8), 314-320 (2006) PDF, HTML-ABSTRACT
Hypothesis Comparative protein modeling of spermidine synthase from Plasmodium falciparum: A potential target for antimalarial drug therapy D.M.R. Sekhara reddy, 1(8), 310-313 (2006) PDF, HTML-ABSTRACT
Hypothesis Paradigm development: Comparative and predictive 3D modeling of HIV-1 Virion Infectivity Factor (vif) S. Balaji et al., 1(8), 290-309 (2006) PDF, HTML-ABSTRACT
Prediction Model Combining algorithms to predict bacterial protein sub-cellular location: Parallel versus concurrent implementations P. D. Taylor et al., 1(8), 285-289 (2006) PDF, HTML-ABSTRACT
Hypothesis An analysis of acetylcholinesterase sequence for predicting mechanisms of its non-catalytic actions M. Srivatsan, 1(8), 281-284 (2006) PDF, HTML-ABSTRACT
Prediction Model Toward bacterial protein sub-cellular location prediction: single-class discrimminant models for all gram- and gram+ compartments P. D. Taylor et al., 1(8), 276-280 (2006) PDF, HTML-ABSTRACT
Volume 1, Issue 8 (2006)
Hypothesis
Modeling of the potential coiled-coil structure
of snapin protein and its interaction with SNARE complex
Web Database
Database of cell signalling
enzymes
Prediction Model
Multi-class subcellular location prediction for
bacterial proteins
Prediction Model
Empirical prediction of peptide octanol-water partition coefficients
Hypothesis
Matrix protein 1: A comparative in silico
study
on different strains of influenza A H5N1 virus
Web Server
SPCalc: A web-based
calculator for sample size and power calculations in micro-array studies
Web Database
DrugMetZ DB: an anthology of
human drug metabolizing chytochrome P450 enzymes
Editorial
An
assessment of the current state of Bioinformatics education
Prediction Model
Hypothesis
Volume 1, Issue 7 (2006)
Prediction Model P. D. Taylor et al., 1(6), 234-236 (2006) PDF, HTML-ABSTRACT
Prediction Model
Web Database
Web Database
Hypothesis
Web Database
Prediction Model
Hypothesis
Hypothesis
Web Database Database management system for the control of malaria in Arunachal Pradesh, India U. S. N Murty et al., 1(6), 194-196 (2006) PDF, HTML-ABSTRACT
Volume 1, Issue 6 (2006) Hypothesis PIR pair-wise alignment: A slip up for signal peptides S. Balaji et al., 1(5), 188-193 (2006) PDF, HTML-ABSTRACT
Prediction Model TATPred: a Bayesian method for the identification of twin arginine translocation pathway signal sequences P. D. Taylor et al., 1(5), 184-187 (2006) PDF, HTML-ABSTRACT
Hypothesis Binding site prediction of galanin peptide using evolutionary trace method S. Nagarajan & P. Marimuthu, 1(5), 180-183 (2006) PDF, HTML-ABSTRACT
Web Server LIPPRED: A web server for accurate prediction of lipoprotein signal sequences and cleavage sites P. D. Taylor et al., 1(5), 176-179 (2006) PDF, HTML-ABSTRACT
Hypothesis Fusion of FNA-cytology and gene-expression data using Dempster-Shafer theory of evidence to predict breast cancer tumors M. Raza et al., 1(5), 170-175 (2006) PDF, HTML-ABSTRACT
Hypothesis Analysis and modeling of mycolyl-transferases in the CMN group H. G. Ramulu et al., 1(5), 161-169 (2006) PDF, HTML-ABSTRACT
Views & Challenges Modeling of phosphomethyl pyrimidine kinase from Leptospira interrogans serovar lai strain 56601 V. Umashankar et al., 1(5), 158-160 (2006) PDF, HTML-ABSTRACT
Web Server A web server for transcription factor binding site prediction G. Su et al., 1(5), 156-157 (2006) PDF, HTML-ABSTRACT
Views & Challenges Protein beta-turn assignments A. Bornot1 & A. G. de Brevern, 1(5), 153-155 (2006) PDF, HTML-ABSTRACT
Database Synchronization of APIIS based farm animal biodiversity systems Z. Duchev & E. Groeneveld, 1(5), 146-152 (2006) PDF, HTML-ABSTRACT
Volume 1, Issue 5 (2006) Views & Challenges Visualization of microarray gene expression data T. V. Prasad & S. I. Ahson, 1(4), 141-145 (2006) PDF, HTML-ABSTRACT
Views & Challenges Artificial life and living systems: Insight into artificial life and its implications in life science research S. Guruprasad & K. Sekar, 1(4), 139-140 (2006) PDF, HTML-ABSTRACT
Hypothesis Prediction of functions for two LEA proteins from mung bean S. Rajesh & A. Manickam, 1(4), 133-138 (2006) PDF, HTML-ABSTRACT
Editorial Bird Flu: A recent threat to human health A. U. Khan, 1(4), 132 (2006) PDF, HTML-ABSTRACT
Web Database A database of 389 medicinal plants for diabetes P. A. Babu, et al., 1(4), 130-131 (2006) PDF, HTML-ABSTRACT
Current Trends Ligation site in proteins recognized in silico M. Brylinski., et al., 1(4), 127-129 (2006) PDF, HTML-ABSTRACT
Hypothesis Identification of hot spot residues at protein-protein interface L. Li et al., 1(4), 121-126 (2006) PDF, HTML-ABSTRACT
Hypothesis Bioinformatics in molecular immunology laboratories demonstrated: Modeling an anti-CMV scFv antibody K. H. Chua & R. Y. Othman, 1(4), 118-120 (2006) PDF, HTML-ABSTRACT
Hypothesis Computational screening of inhibitors for HIV-1 integrase using a receptor based pharmacophore model J. Jaganatharaja & R. Gowthaman, 1(4), 112-117 (2006) PDF, HTML-ABSTRACT
Editorial Getting started in Bioinformatics M. Gollery, 1(4), 110-111 (2006) PDF, HTML-ABSTRACT
Volume 1, Issue 4 (2006)
Editorial Computational Biology and Bioinformatics: A tinge of Indian spice N. Srinivasan, 1(3), 105-109 (2006) PDF, HTML-ABSTRACT
Hypothesis Insight into gene fusion from molecular dynamics simulation of fused and un-fused IGPS (Imidazole Glycerol Phosphate Synthetase) Y. Yiting et al., 1(3), 99-104 (2006) PDF, HTML-ABSTRACT
Views & Challenges On gene ontology and function annotation D. Pal, 1(3), 97-98 (2006) PDF, HTML-ABSTRACT
Current Trends
Recent trends in Remote homology
detection: an Indian Medley
Software MAP MUTATION: a program for analyzing mutations in protein sequences T. Anwar & A. U. Khan, 1(3), 92-93 (2006) PDF, HTML-ABSTRACT
Software SSRscanner: a program for reporting distribution and location of simple sequence repeats T. Anwar & A. U. Khan, 1(3), 89-91 (2006) PDF, HTML-ABSTRACT
Hypothesis Bioinformatics models in drug abuse and neuro-AIDS: Using and developing databases P. Shapshak et al., 1(3), 86-88 (2006) PDF, HTML-ABSTRACT
Software GEDAS – Gene expression data analysis suite T. V. Prasad et al., 1(3), 83-85 (2006) PDF, HTML-ABSTRACT
Views & Proposal Comparative modeling of class 1 lysyl tRNA synthetase from Treponema pallidum V. R. D. K. Rao et al., 1(3), 81-82 (2006) PDF, HTML-ABSTRACT
Web Database Dihedral angle and secondary structure database of short amino acid fragments S. Dayalan et al., 1(3), 78-80 (2006) PDF, HTML-ABSTRACT
Volume 1, Issue 3 (2006)
Web Database A database for coconut crop improvement V. Rajagopal et al., 1(2), 75-77 (2005) PDF, HTML-ABSTRACT
Prediction Model Prediction of cystine connectivity using SVM G. L. Jayavardhana Rama et al., 1(2), 69-74 (2005) PDF, HTML-ABSTRACT
Hypothesis Mapping and analysis of simple sequence repeats in the Arabidopsis thaliana genome T. Anwar & A. U. Khan, 1(2), 64-68 (2005) PDF, HTML-ABSTRACT
Prediction Model Prediction of HLA-A2 binding peptides using Bayesian network V. Astakhov & A. Cherkasov, 1(2), 58-63 (2005) PDF, HTML-ABSTRACT
Web Database A database for medicinal and aromatic plants of JK (Jammu and Kashmir) in India A. Masood & M. Shafi, 1(2), 56-57 (2005) PDF, HTML-ABSTRACT
Hypothesis A secondary structural common core in the ribosomal ITS2 (internal transcribed spacer) of culex species from diverse geographical locations R. Bhargavi et al., 1(2), 52-55 (2005) PDF, HTML-ABSTRACT
Web Database A database for Plasmodium falciparum protein models R. Gowthaman et al., 1(2), 50-51 (2005) PDF, HTML-ABSTRACT
Hypothesis Structural features differentiate the mechanisms between 2S (2 state) and 3S (3 state) folding homodimers L. Li et al., 1(2), 42-49 (2005) PDF, HTML-ABSTRACT
Web database Rapid identification of female culex mosquito species using Expert System in the South East Asian region U. S. N. Murty et al., 1(2), 40-41 (2005) PDF, HTML-ABSTRACT
Hypothesis Protein subunit interfaces: Heterodimers versus Homodimers C. Zhanhua et al., 1(2), 28-39 (2005) PDF, HTML-ABSTRACT
Volume 1, Issue 2 (2005)
Hypothesis Modeling analysis of GST (glutathione-S-transferases) from Wuchereria bancrofti and Brugia malayi R. Bhargavi et al., 1(1), 25-27 (2005) PDF, HTML-ABSTRACT
Web server T-Epitope designer: A HLA-peptide binding prediction server P. Kangueane & M.K. Sakharkar 1(1), 21-24 (2005) PDF, HTML-ABSTRACT
Web database A Web based relational database management system for filariasis control U. S. N. Murty et al., 1(1), 19-20 (2005) PDF, HTML-ABSTRACT
Web database AVATAR: A database for genome-wide alternative splicing event detection using large scale ESTs and mRNAs F. R. Hsu et al., 1(1), 16-18 (2005) PDF, HTML-ABSTRACT
Views & proposal A rapid identification system for metallothionein proteins using expert system B. Praveen et al., 1(1), 14-15 (2005) PDF, HTML-ABSTRACT
Review hypothesis A hypothesis to relate salivary tumors with mammary and prostate neoplasias A. B. Actis 1(1), 12-13 (2005) PDF, HTML-ABSTRACT
Disease management model Management of filariasis using prediction rules derived from data mining D. V. R. S. Kumar et al., 1(1), 8-11 (2005) PDF, HTML-ABSTRACT
Web database Antibiotic Resistance Genes Online (ARGO): A database on vancomycin and b-lactam resistance genes J. Scaria et al., 1(1), 5-7 (2005) PDF, HTML-ABSTRACT
Web database APDbase: Amino acid physico-chemical properties database V. S. Mathura & D. Kolippakkam, 1(1), 2-4 (2005) PDF, HTML-ABSTRACT
Editorial Welcome to “Bioinformation” a data journal P. Kangueane, 1(1), 1 (2005) PDF, HTML-ABSTRACT
Volume 1, Issue 1 (2005)
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