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Title

miRAFinder and GeneAFinder scripts: large-scale searching for miRNA and related information in indexed literature abstracts

 

Authors

Olga Berillo1*, Mireille Régnier2 & Anatoly Ivashchenko1

 

Affiliation

1National nanotechnology laboratory, al-Farabi Kazakh National University, Almaty, Kazakhstan; 2INRIA/LIX team AMIB, École Polytechnique, Palaiseau, France

 

Email

devolia18@mail.ru; *Corresponding author

 

Article Type

Software

Date

Received July 03, 2014; Revised July 14, 2014; Accepted July 16, 2014; Published August 30, 2014

 

Abstract

In recent times, information on miRNAs and their binding sites is gaining momentum. Therefore, there is interest in the development of tools extracting miRNA related information from known literature. Hence, we describe GeneAFinder and miRAFinder scripts (open source) developed using python programming for the semi-automatic extraction and arrangement of updated information on miRNAs, genes and additional data from published article abstracts in PubMed. The scripts are suitable for custom modification as per requirement.

 

Availability

miRAFinder and GeneAFinder scripts are free and available for download at http: //sites.google.com /site/malaheenee/software.

 

Keywords

python script, gene information, miRNA information, semi-automatic extraction.

 

Citation

Berillo et al. Bioinformation 10(8): 539-543 (2014)
 

Edited by

P Kangueane

 

ISSN

0973-2063

 

Publisher

Biomedical Informatics

 

License

This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.