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Title

Genome wide identification and functional assignments of C2H2 Zinc-finger family transcription factors in Dichanthelium oligosanthes

 

Authors

Manisha Mahapatra, Bijayalaxmi Mahanty, Raj Kumar Joshi*

 

Affiliation

Department of Biotechnology, Rama Devi Women’s University, Vidya Vihar, Bhubaneswar-751022, Odisha, INDIA

 

Email

Dr. Raj Kumar Joshi - Email: rkjoshi@rdwu.ac.in; *Corresponding author

 

Article Type

Research Article

 

Date

Received April 15, 2019; Revised October 16, 2019; Accepted October 16, 2019; Published October 16, 2019

 

Abstract

Transcription factors (TFs) are biological regulators of gene function in response to various internal and external stimuli. C2H2 zinc finger proteins (C2H2-ZFPs) are a large family of TFs that play crucial roles in plant growth and development, hormone signalling and response to
biotic and abiotic stresses. While C2H2-ZFPs have been well characterized in many model and crop plants, they are yet to be ascertained in the evolutionarily important C3 plant Dichanthelium oligosanthes (Heller’s rosette grass). In the present study, we report 32 C2H2-ZF genes
(DoZFs) belonging to three different classes-Q type, C-type and Z-type based on structural elucidation and phylogenetic analysis. Sequence comparisons revealed paralogs within the DoZFs and orthologs among with rice ZF genes. Motif assignment showed the presence of the
distinctive C2H2-ZF conserved domain “QALGGH” in these proteins. Cis-element analysis indicated that majority of the predicted C2H2-ZFPs are associated with hormone signalling and abiotic stress responses. Further, their role in nucleic acid binding and transcriptional
regulation was also observed using predicted functional assignment. Thus, we report an overview of the C2H2-ZF gene family in D. oligosanthes that could serve as the basis for future experimental studies on isolation and functional implication of these genes in different
biological mechanism of C3 plants.

 

Keywords

Zinc fingers, C2H2-ZFPs, transcription factors, phylogenetic analysis, Dichanthelium oligosanthes

 

Citation

Mahapatra et al. Bioinformation 15(9): 689-696 (2019)

 

Edited by

P Kangueane

 

ISSN

0973-2063

 

Publisher

Biomedical Informatics

 

License This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.