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Title

 

 

 

 

 

CHPVDB - a sequence annotation database for Chandipura Virus

Authors

 

Manas Ranjan Dikhit, Sindhu Prava Rana, Pradeep Das, Ganesh Chandra Sahoo* 

Affiliation

 

BioMedical Informatics Division, Rajendra Memorial Research Institute of Medical Sciences, Agam Kuan, Patna, India - 800007

 

Email

 

ganeshiitkgp@gmail.com ; * Corresponding authors

Article Type

 

Database

 

Date

 

received December 10, 2008; accepted January 19, 2009; published February 28, 2009

 

Abstract

Databases containing proteomic information have become indispensable for virology studies. As the gap between the amount of sequence information and functional characterization widens, increasing efforts are being directed to the development of databases. For virologist, it is therefore desirable to have a single data collection point which integrates research related data from different domains. CHPVDB is our effort to provide virologist such a one-step information center. We describe herein the creation of CHPVDB, a new database that integrates information of different proteins in to a single resource. For basic curation of protein information, the database relies on features from other selected databases, servers and published reports. This database facilitates significant relationship between molecular analysis, cleavage sites, possible protein functional families assigned to different proteins of Chandipura virus (CHPV) by SVMProt and related tools.

 

Keywords

database, CHPV, CHPVDB, Chandipura virus, proteins, sequences

Availability

The database is freely available at http://chpvdb.biomedinformri.org/

Citation

Dikhit et al., Bioinformation 3(7): 299-302 (2009)

Edited by

P. Kangueane

 

ISSN

0973-2063

 

Publisher

Biomedical Informatics Publishing Group

 

Copyright

Publisher

 

Copyright Transfer Agreement

 

The authors of published articles in Bioinformation automatically transfer the copyright to the publisher upon formal acceptance. However, the authors reserve right to use the information contained in the article for non commercial purposes.

 

License

 

 

This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.