Beyond Bioinformatics

It is free to publish, open access and online immediately upon acceptance
                               Home About the journal Editorial Board Archives Author Guidelines Contact us               ISSN 0973-2063

         

 

               

 

 

 

 

Prediction Model

PCA-HPR: A principle component analysis model for human promoter recognition

X. Li et al., Bioinformation 2(8), ???-??? (2008) PDF, HTML-ABSTRACT

 

Web Database

PlantGI: a database interface for searching of gene indices from agricultural plants

C. K. Kim et al., Bioinformation 2(8), ???-??? (2008) PDF, HTML-ABSTRACT

 

Software

PyDeT, a PyMOL plug-in for visualizing geometric concepts around proteins

R. Ordog, Bioinformation 2(8), ???-??? (2008) PDF, HTML-ABSTRACT

 

Hypothesis

In silico approach to map the binding site of doxorubicin on hemoglobin

S. N. Khan & A. U. Khan, Bioinformation 2(8), ???-??? (2008) PDF, HTML-ABSTRACT

 

Current Trends

Oncomirs: The potential role of non-coding microRNAs in understanding cancer

J. Manikandan et al., Bioinformation 2(8), ???-??? (2008) PDF, HTML-ABSTRACT

 

Hypothesis

Evolutionary trace analysis at the ligand binding site of laccase

S. B. Mohamad et al., Bioinformation 2(8), ???-??? (2008) PDF, HTML-ABSTRACT

 

Hypothesis

A prognostic model for the combined analysis of gene expression profiling in hepatocellular carcinoma

B. Zee et al., Bioinformation 2(8), ???-??? (2008) PDF, HTML-ABSTRACT

 

Prediction Model

CpGIF: an algorithm for the identification of CpG islands

S. Ye et al., Bioinformation 2(8), ???-??? (2008) PDF, HTML-ABSTRACT

 

Hypothesis

Alzheimer’s disease and HIV associated dementia related genes: location and function

P. Shapshak et al., Bioinformation 2(8), ???-??? (2008) PDF, HTML-ABSTRACT

 

Hypothesis

The structure function relationship of beta glucuronidase in E. coli and Staphylococcus sp

L. Arul et al., Bioinformation 2(8), ???-??? (2008) PDF, HTML-ABSTRACT

 

Hypothesis

Virtual screening for novel COX-2 inhibitors using the ZINC database

K. N. Sudha et al., Bioinformation 2(8), 325-329 (2008) PDF, HTML-ABSTRACT

 

Software

HapMap Filter 1.0: A tool to preprocess the HapMap genotypic data for association studies

W. Zhang et al., Bioinformation 2(8), 322-324 (2008) PDF, HTML-ABSTRACT

 

Volume 2, Issue 8  (2008)

-Begin-

----------------------------------------------------------------------------------------------------------

-End-

Volume 2, Issue 7  (2008)

 

Prediction Model

Prediction for human transcription starts by using diversity measure with quadratic discriminant

J. Lu & L. Luo, Bioinformation 2(7), 316-321 (2008) PDF, HTML-ABSTRACT

 

Hypothesis

Molecular authentication of three Italian melon accessions by ARMS-PCR and ITS1 (internal transcribed spacer 1) secondary structure prediction

S. Fantaccione, Bioinformation 2(7), 311-315 (2008) PDF, HTML-ABSTRACT

 

Current Trends

Silkworm nucleotide databases - Current trends and future prospects

N. Koshy et al., Bioinformation 2(7), 308-310 (2008) PDF, HTML-ABSTRACT

 

Hypothesis

Role of thymine in protein coding frames of mRNA sequences

P. Anandagopu et al., Bioinformation 2(7), 304-307 (2008) PDF, HTML-ABSTRACT

 

Hypothesis

SDED: A novel filter method for cancer-related gene selection

W. Zu et al., Bioinformation 2(7), 301-303 (2008) PDF, HTML-ABSTRACT

 

Hypothesis

Primary response of the sGC heme binding domain to the cleavage of the Fe-His bond

H. Zhang et al., Bioinformation 2(7), 296-300 (2008) PDF, HTML-ABSTRACT

 

Hypothesis

Functional annotations in bacterial genomes based on small RNA signatures

J. Sridhar & Z. A. Rafi, Bioinformation 2(7), 284-295 (2008) PDF, HTML-ABSTRACT

 

Software
A tool for the prediction of functionally important sites in proteins using library of functional templates

C. J. Lanczycki & S. Chakrabarti, Bioinformation 2(7), 279-283 (2008) PDF, HTML-ABSTRACT

 

Prediction Model
Multi-scale parametric spectral analysis for exon detection in DNA sequences based on forward-backward linear prediction and singular value decomposition of the double-base curves

M. K. Choong & H. Yan, Bioinformation 2(7), 273-278 (2008) PDF, HTML-ABSTRACT

 

Web server

CALCOM: A software for calculating the center of mass of proteins
S. Costantini et al., Bioinformation 2(7), 271-272 (2008)
PDF, HTML-ABSTRACT
 

Volume 2, Issue 7  (2008)

-Begin-

----------------------------------------------------------------------------------------------------------

-End-

Volume 2, Issue 6  (2008)

 

Prediction Model
RetroPred: A tool for prediction, classification and extraction of non-LTR retrotransposons (LINEs and SINEs) from the genome by integrating PALS, PILER, MEME and ANN
P. K. Naik et al., Bioinformation 2(6), 263-270 (2008)
PDF, HTML-ABSTRACT

 

Web database

A database on endemic plants at Tirumala hills in India

S. A. A. Latheef, et al., Bioinformation 2(6), 260-262 (2008) PDF, HTML-ABSTRACT

 

Views & Challenges
SMARThivCD4mos: A complexity free and cost effective model technology for monitoring HIV patients CD4 number in resource poor settings

A. Yari et al., Bioinformation 2(6), 257-259 (2008) PDF, HTML-ABSTRACT

 

Prediction Model

An SVM method using evolutionary information for the identification of allergenic proteins

K. K. Kumar & P. S. Shelokar, Bioinformation 2(6), 253-256 (2008) PDF, HTML-ABSTRACT

 

Hypothesis

Evaluation of the combined effect of Sesamin and Schisandra extract on blood fluidity

D. Tsi & A. Tan, Bioinformation 2(6), 249-252 (2008) PDF, HTML-ABSTRACT

 

Views & Challenges
SMARThivVLmos: A complexity-free and cost effective dynamic model technology for monitoring HIV viral load in resource-poor settings

A. Yari et al., Bioinformation 2(6), 246-248 (2008) PDF, HTML-ABSTRACT

 

Editorial

MetaHuman Genomics
M. Gollery, Bioinformation 2(6), 245 (2008)
PDF, HTML-ABSTRACT

 

Hypothesis

Proposed lead molecules against hemagglutinin of avian influenza virus (H5N1)

T. Nandi, Bioinformation 2(6), 240-244 (2008) PDF, HTML-ABSTRACT

 

Views & Challenges
On the challenges of the HapMap resource

W. Zhang & M. E. Dolan, Bioinformation 2(6), 238-239 (2008) PDF, HTML-ABSTRACT

 

Views & Challenges
RNAi and RNAa - The Yin and Yang of RNAome

P. N. Pushparaj et al., Bioinformation 2(6), 235-237 (2008) PDF, HTML-ABSTRACT

 

Volume 2, Issue 6  (2008)

-Begin-

----------------------------------------------------------------------------------------------------------

-End-

Special issue for InCoB2007 Bioinformatics conference

(edited by T. W. Tan & S. Ranganathan)

(Assisted by AM Khan, AT Heiny, O Miotto, JC Tong)

 

Volume 2, Issue 5  (2007)
 

Hypothesis

On sparse Fisher discriminant method for microarray data analysis
E. S. Fung & M. K. Ng, Bioinformation 2(5), 230-234 (2007)
PDF, HTML-ABSTRACT

 

Hypothesis

Improving the prediction of RNA secondary structure by detecting and assessing conserved stems
X. Fang, Bioinformation 2(5), 222-229 (2007)
PDF, HTML-ABSTRACT

 

Hypothesis

Being a Binding Site: Characterizing residue composition of binding sites on proteins
G. Ivan, et al., Bioinformation 2(5), 216-221 (2007)
PDF, HTML-ABSTRACT


Hypothesis
Finding distinct biclusters from background in gene expression matrices
Z. Wu et al., Bioinformation 2(5), 207-215 (2007)
PDF, HTML-ABSTRACT

 

Hypothesis

A cascaded approach to normalizing gene mentions in biomedical literature
H. Yang et al., Bioinformation 2(5), 197-206 (2007)
PDF, HTML-ABSTRACT

Web Server

GS2PATH: A web-based integrated analysis tool for finding functional relationships using gene ontology and biochemical pathway data
J. O. Yang et al., Bioinformation 2(5), 194-196 (2007)
PDF, HTML-ABSTRACT

 

Hypothesis

Functional Gene clustering via gene annotation sentences, MeSH and GO keywords from biomedical literature
J. Natarajan and J. Ganapathy Bioinformation 2(5), 185-193 (2007)
PDF, HTML-ABSTRACT

Hypothesis

Speedup Bioinformatics applications on multicore-based processor using vectorizing and multithreading strategies
K. Chaichoompu et al., Bioinformation 2(5), 182-184 (2007)
PDF, HTML-ABSTRACT

 

Hypothesis

Iterative local Gaussian clustering for expressed genes identification linked to malignancy of human colorectal carcinoma
I. Wasito et al., Bioinformation 2(5), 175-181 (2007)
PDF, HTML-ABSTRACT

Hypothesis

An Efficient method for statistical significance calculation of transcription factor binding sites
Z. Qian et al., Bioinformation 2(5), 169-174 (2007)
PDF, HTML-ABSTRACT

 

Volume 2, Issue 5  (2007)

Special issue for InCoB2007 Bioinformatics conference

(edited by T. W. Tan & S. Ranganathan)

(Assisted by AM Khan, AT Heiny, O Miotto, JC Tong)

-Begin-

----------------------------------------------------------------------------------------------------------

-End-

Volume 2, Issue 4  (2007)

 

Hypothesis

A comparison of four pair-wise sequence alignment methods

N. Essoussi & S. Fayech, Bioinformation 2(4), 166-168 (2007) PDF, HTML-ABSTRACT

 

Software

CliniProteus: A flexible clinical trials information management system

V. S. Mathura, Bioinformation 2(4), 163-165 (2007) PDF, HTML-ABSTRACT

 

Hypothesis

Insilco analysis of functionally important residues in folate receptors

K. Ramamoorthy et al., Bioinformation 2(4), 157-162 (2007) PDF, HTML-ABSTRACT

 

Views & Challenges
Alternative splicing:  a paradoxical qudo in eukaryotic genomes

L. Kashyap & R. K. Sharma, Bioinformation 2(4), 155-156 (2007) PDF, HTML-ABSTRACT

 

Web Database

Database of neurodegenerative disorders

R. Gowthaman et al., Bioinformation 2(4), 153-154 (2007) PDF, HTML-ABSTRACT

 

Hypothesis

Comparative sequence analysis of acid sensitive and resistance proteins in Escherichia coli and Shigella flexneri

S. Manikandan et al., Bioinformation 2(4), 145-152 (2007) PDF, HTML-ABSTRACT

 

Hypothesis

Towards reconstructing a metabolic tree of life

M. Marcet-Houben et al., Bioinformation 2(4), 135-144 (2007) PDF, HTML-ABSTRACT

 

Views & Challenges
Integrating information from existing databases for enhanced function annotation of genes, genomes and networks
L. Tripathi, Bioinformation 2(4), 132-134 (2007)
PDF, HTML-ABSTRACT

 

Hypothesis
Mining for SNPs and indels in EST libraries of oil palm
A. Riju et al., Bioinformation 2(4), 128-131 (2007)
PDF, HTML-ABSTRACT

 

Editorial
E-infrastructure technologies triggering of Bioinformatics development
I. Roterman, Bioinformation 2(4), 126-127 (2007)
PDF, HTML-ABSTRACT

 

Volume 2, Issue 4  (2007)

-Begin-

----------------------------------------------------------------------------------------

-End-

Volume 2, Issue 3  (2007)

Hypothesis
Three dimensional modeling of N-terminal region of galanin and its interaction with the galanin receptor – An insilico based strategy
M. Parthiban & P. Shanmughavel, Bioinformation 2(3), 119-125 (2007)
PDF, HTML-ABSTRACT

 

Hypothesis
FGO: A novel ontology for identification of ligand functional group
P. K. Varadwaj & T. Lahiri, Bioinformation 2(3), 113-118 (2007)
PDF, HTML-ABSTRACT

 

Prediction Model
Prediction of enzymes and non-enzymes from protein sequences based on sequence derived features and PSSM matrix using Artificial Neural Network
P. K. Naik et al., Bioinformation 2(3), 107-112 (2007)
PDF, HTML-ABSTRACT

 

Web Database
A database for medicinal plants used in treatment of asthma
B. Kasirajan et al., Bioinformation 2(3), 105-106 (2007)
PDF, HTML-ABSTRACT

 

Hypothesis
Isoelectric points of multi-domain proteins
O. Carugo, Bioinformation 2(3), 101-104 (2007)
PDF, HTML-ABSTRACT

 

Views & Challenges
SMARThivPack: A complexity-free and cost effective “three tests” combo kit model for improving HIV patients monitoring standards in resource–poor settings.
A. Yari et al., Bioinformation 2(3), 97-100 (2007)
PDF, HTML-ABSTRACT

 

Views & Challenges

CDAC – Development of a curated database of anticancer compounds from marine resources

S. H. Prasad & M. Deccaraman, Bioinformation 2(3), 96 (2007) PDF, HTML-ABSTRACT

 

Views & Challenges

Alzheimer’s disease care and management: Role of information technology

H. Thota et al., Bioinformation 2(3), 91-95 (2007) PDF, HTML-ABSTRACT

 

Web Server

IWS: Integrated Web Server for protein sequence and structure analysis
K. Shameer & R. Sowdhamini, Bioinformation 2(3), 86-90 (2007)
PDF, HTML-ABSTRACT

 

Views & Challenges

E-Learning as a new tool in bioinformatics teaching

S. Vijayakumar & P. Shanmughavel, Bioinformation 2(3), 83-85 (2007) PDF, HTML-ABSTRACT

 

Volume 2, Issue 3  (2007)

-Begin-

----------------------------------------------------------------------------------------

-End-

 

Volume 2, Issue 2  (2007)

Retraction

An article titled below is revoked from publication due to potential misuse of names

TMPHMMLoc: A web server for subcellular localization prediction of  transmembrane proteins

Corresponding author: Zhengzhi Wang, National University of Defence Technology, Changsha, Hunan 410073, China

 

Prediction Model

Photosensitivity in Smith-Lemli-Opitz syndrome: A flux balance analysis of altered metabolism

B. R. Eapen, Bioinformation 2(2), 78-82 (2007)  PDF, HTML-ABSTRACT

 

Views & Challenges

An automated protein annotation filter for integrating web-based annotation tools
V. Saravanan & P. Shanmughavel, Bioinformation 2(2), 76-87 (2007)
  PDF, HTML-ABSTRACT
 

Web Database

TeCK Database: A comprehensive collection of telomeric and centromeric sequences with their associated proteins

R. Gowthaman et al., Bioinformation 2(2), 73-75 (2007) PDF, HTML-ABSTRACT

 

Hypothesis

Choke point analysis of metabolic pathways in E.histolytica: A computational approach for drug target identification

S. Singh et al., Bioinformation 2(2), 68-72 (2007) PDF, HTML-ABSTRACT

 

Web Database

DoD2007: 1082 molecular biology databases

P. A. Babu et al., Bioinformation 2(2), 64-67 (2007) PDF, HTML-ABSTRACT

 

Software

ACUA: A software tool for automated codon usage analysis

V. Umashankar et al., Bioinformation 2(2), 62-63 (2007) PDF, HTML-ABSTRACT

 

Hypothesis

Identification of a casein kinase II phosphorylation domain in NS1 protein of H5N1 influenza virus

T. Anwar & A. U. Khan, Bioinformation 2(2), 57-61 (2007) PDF, HTML-ABSTRACT

 

Hypothesis

Alternatively spliced isoforms encoded by cadherin genes from C. elegans genome

L. Kashyap et al., Bioinformation 2(2), 50-56 (2007) PDF, HTML-ABSTRACT

 

Hypothesis

Identification and comparative analysis of novel alternatively spliced transcripts of RhoGEF domain encoding gene in C. elegans and C. briggsae

L. Kashyap et al., Bioinformation 2(2), 43-49 (2007) PDF, HTML-ABSTRACT

 

Hypothesis

Short-term response is predictive of long-term response to acetylcholinesterase inhibitors in Alzheimer’s disease: A starting point to explore Bayesian approximation in clinical practice

E. Rota et al., 2(2), 39-42 (2007) PDF, HTML-ABSTRACT

 

Volume 2, Issue 2  (2007)

-Begin-

----------------------------------------------------------------------------------------

-End-

Volume 2, Issue 1  (2007)

 

Views & Challenges

Current state of immunology research in India

A. Surolia & R. Dhar, 2(1), 34-38 (2007) PDF, HTML-ABSTRACT

 

Views & Challenges

Hypo, hype and 'hyp' human proteins
P. Suravajhala, 2(1), 31-33 (2007)
PDF, HTML-ABSTRACT

 

Hypothesis

HBNG: Graph theory based visualization of hydrogen bond networks in protein structures
A. Tiwari & V. Tiwari, 2(1), 28-30 (2007)
PDF, HTML-ABSTRACT

 

Current Trends

aluminium blunts the proliferative response, and increases apoptosis of cultured human cells: putative relationship to alzheimer’s disease

P. Prolo et al., 2(1), 24-27 (2007) PDF, HTML-ABSTRACT

 

Web Database

A database for medicinal plants used in treatment of diabetes and its secondary complications
N. Arulrayan et al., 2(1): 22-23 (2007) PDF, HTML-ABSTRACT

 

Hypothesis

Computational and molecular characterization of multiple isoforms of lfe-2 gene in nematode C. elegans
L. Kashyap et al., 2(1), 17-21 (2007)
PDF, HTML-ABSTRACT

 

Hypothesis

Drug, dosage, activity, studies of antimalarials by physical methods – II

B. R. Murthy et al., 2(1), 12-16 (2007) PDF, HTML-ABSTRACT

 

Views & Challenges

An insight into Cyanobacterial genomics - a perspective

P. T. V. Lakshmi, 2(1), 8-11 (2007) PDF, HTML-ABSTRACT

 

Software

Mfuzz: A software package for soft clustering of microarray data

L. Kumar & M. E. Futschik, 2(1), 5-7 (2007) PDF, HTML-ABSTRACT

 

Current Trends

Neuroendocrine-immunity in patients with Alzheimer's disease: toward translational epigenetics-current trends

F. Chiappelli et al., 2(1), 1-4 (2007) PDF, HTML-ABSTRACT

 

Volume 2, Issue 1 (2007)

-Begin-

----------------------------------------------------------------------------------------

  

Bioinformation

...archived at...

PubMed Central

Thomson Gale

Amazon.com

EBSCO

...indexed in...

PubMed

DOAJ

Thomson Gale

Open J-Gate

Google Scholar

Publishers

Biomedical Informatics

Thomson Gale

  

                                                                                                                                      

                                                                                                            ISSN 0973-2063  ##  Last updated on May 14, 2008

                                                                                                                            © 2007 Biomedical Informatics